Package: DLMtool 6.0.6

DLMtool: Data-Limited Methods Toolkit

A collection of data-limited management procedures that can be evaluated with management strategy evaluation with the 'MSEtool' package, or applied to fishery data to provide management recommendations.

Authors:Tom Carruthers [aut], Quang Huynh [aut], Adrian Hordyk [aut, cre], M. Bryan [ctb], HF. Geremont [ctb], C. Grandin [ctb], W. Harford [ctb], Q. Huynh [ctb], C. Walters [ctb]

DLMtool_6.0.6.tar.gz
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DLMtool.pdf |DLMtool.html✨
DLMtool/json (API)
NEWS

# Install 'DLMtool' in R:
install.packages('DLMtool', repos = c('https://adrianhordyk.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.54 score 1 stars 1 packages 229 scripts 678 downloads 1 mentions 129 exports 41 dependencies

Last updated 2 years agofrom:f42d4e74f8. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-win-x86_64OKNov 08 2024
R-4.5-linux-x86_64OKNov 08 2024
R-4.4-win-x86_64OKNov 08 2024
R-4.4-mac-x86_64OKNov 08 2024
R-4.4-mac-aarch64OKNov 08 2024
R-4.3-win-x86_64OKNov 08 2024
R-4.3-mac-x86_64OKNov 08 2024
R-4.3-mac-aarch64OKNov 08 2024

Exports:AvCAvC_MLLBKBK_CCBK_MLCCCC1CC2CC3CC4CC5CompSRACompSRA_CompSRA4010CurCcurEcurE75DAACDBSRADBSRA_DBSRA_40DBSRA4010DBSRAoptDCACDCAC_DCAC_40DCAC_MLDCAC4010DCACsDDDD_DD_RDD4010DDeDDe75DDesdemofndemographic2DepFDTe40DTe50DynFEtargetLoptFadaptFdemFdem_Fdem_CCFdem_MLFilterSmoothFratioFratio_Fratio_CCFratio_MLFratio4010GB_CCGB_slopeGB_targetGcontrolgetrHDAACICIICI2IratioIslope_Islope1Islope2Islope3Islope4IT_IT10IT5Itarget_Itarget1Itarget1_MPAItarget2Itarget3Itarget4ItargetE1ItargetE2ItargetE3ItargetE4Itargeteff_ITe10ITe5ITMiVBL95targetLBSPRLBSPR_LBSPR_MLLLratio_BHILratio_BHI2Lratio_BHI3LstepCC1LstepCC2LstepCC3LstepCC4LstepCE1LstepCE2Ltarget1Ltarget2Ltarget3Ltarget4LtargetE1LtargetE4matlenlimmatlenlim2MCDMCD4010minlenLopt1MRnorealMRrealRcontrolRcontrol2SBT1SBT2slotlimSPmodSPMSYSPslopeSPSRASPSRA_SPSRA_MLSPSRAoptYPRYPR_YPR_CCYPR_MLYPRopt

Dependencies:abindclicolorspacedplyrfansifarvergenericsggplot2ggrepelgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvMSEtoolmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalessnowsnowfalltibbletidyselectTMButf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Average CatchAvC
Average Catch with a size limitAvC_MLL
Beddington and Kirkwood life-history MPBK BK_CC BK_ML
Geromont and Butterworth (2015) Constant CatchCC1 CC2 CC3 CC4 CC5 CurC
Age-Composition Stock-Reduction AnalysisCompSRA CompSRA4010
Fishing at current effort levelscurE curE75
Depletion-Based Stock Reduction AnalysisDBSRA DBSRA4010 DBSRA_40
Depletion Corrected Average CatchDAAC DCAC DCAC4010 DCACs DCAC_40 DCAC_ML HDAAC
Delay - Difference Stock AssessmentDD DD4010
Effort-based Delay - Difference Stock AssessmentDDe DDe75 DDes
Effort searching MP aiming for a fixed stock depletionDTe40 DTe50
Dynamic Fratio MPDynF
Effort Target Optimum LengthEtargetLopt
Adaptive FratioFadapt
Demographic FMSY methodFdem Fdem_CC Fdem_ML
FMSY/M ratio methodsDepF Fratio Fratio4010 Fratio_CC Fratio_ML
Geromont and Butterworth Constant Catch Harvest Control RuleGB_CC
Geromont and Butterworth index slope Harvest Control RuleGB_slope
Geromont and Butterworth target CPUE and catch MPGB_target
G-control MPGcontrol
Index Confidence IntervalICI ICI2
Mean Index RatioIratio
Index Slope Tracking MPIslope1 Islope2 Islope3 Islope4
Iterative Index Target MPIT10 IT5
Incremental Index Target MPItarget1 Itarget2 Itarget3 Itarget4
Itarget1 with an MPAItarget1_MPA
Incremental Index Target MP - Effort-BasedItargetE1 ItargetE2 ItargetE3 ItargetE4
Index Target Effort-BasedITe10 ITe5
Index Target based on natural mortality rateITM
Length-Based SPR MPsLBSPR LBSPR_MLL
Mean length-based indicator MP of Jardim et al. 2015Lratio_BHI Lratio_BHI2 Lratio_BHI3
Step-wise Constant CatchLstepCC1 LstepCC2 LstepCC3 LstepCC4
Step-wise Constant EffortLstepCE1 LstepCE2
Length Target TAC MPL95target Ltarget1 Ltarget2 Ltarget3 Ltarget4
Length Target TAE MPLtargetE1 LtargetE4
Size limit management proceduresmatlenlim matlenlim2 minlenLopt1 slotlim
Mean Catch DepletionMCD MCD4010
Spatial closure and allocation management proceduresMRnoreal MRreal
Intrinsic rate of Increase MPRcontrol Rcontrol2
SBT simple MPSBT1 SBT2
Surplus production based catch-limit modifierSPmod
Catch trend Surplus Production MSY MPSPMSY
Slope in surplus production MPSPslope
Surplus Production Stock Reduction AnalysisSPSRA SPSRA_ML
Yield Per Recruit analysis to get FMSY proxy F01YPR YPR_CC YPR_ML